VCAN K1516R - GET-Evidence

Note: This variant has not been sufficiently evaluated by a GET-Evidence editor.

To be considered sufficiently evaluated a variant must have both "variant evidence" and "clinical importance" scores filled in.

Please help improve GET-Evidence by evaluating evidence for this variant!

Curation:
Currentness:

VCAN K1516R

(VCAN Lys1516Arg)


Short summary

 

Variant evidence
Computational -
Functional -
Case/Control -
Familial -
 
Clinical importance
Severity -
Treatability -
Penetrance -
 

Impact

Insufficiently evaluated not reviewed

(The "insufficiently evaluated" qualifier is assigned automatically based on the above evidence and importance scores.)

Inheritance pattern

unknown

Summary of published research, and additional commentary

 

Allele frequency

  • G @ chr5:82833369: 49.9% (5372/10758) in EVS
  • AG @ chr5:82869123: 53.1% (68/128) in GET-Evidence
  • Frequency shown in summary reports: 49.9% (5372/10758)

Publications
 

Genomes
 

hu034DB1 - CGI sample GS00253-DNA_A02_200_37
het G @ chr5:82833369

 

hu04FD18 - CGI sample GS00253-DNA_F01_200_37
het G @ chr5:82833369

 

hu0D879F - CGI sample GS00253-DNA_G01_200_37
hom G @ chr5:82833369

 

 

 

 

 

 

 

 

 

 

 

 

 

hu604D39 - CGI sample GS00253-DNA_B02_200_37
het G @ chr5:82833369

 

 

 

 

 

hu9385BA - CGI sample GS00253-DNA_E01_200_37
het G @ chr5:82833369

 

 

huAE6220 - CGI sample GS00253-DNA_H01_200_37
het G @ chr5:82833369

 

 

huBEDA0B - CGI sample GS00253-DNA_C01_200_37
het G @ chr5:82833369

 

huC30901 - CGI sample GS00253-DNA_B01_200_37
het G @ chr5:82833369

 

 

 

huE80E3D - CGI sample GS00253-DNA_D01_200_37
het G @ chr5:82833369

 

 

GS06994 - var-GS06994-1100-36-ASM
het G @ chr5:82869125

 

GS07357 - var-GS07357-1100-36-ASM
het G @ chr5:82869125

 

GS10851 - var-GS10851-1100-36-ASM
het G @ chr5:82869125

 

GS12004 - var-GS12004-1100-36-ASM
het G @ chr5:82869125

 

GS18501 - var-GS18501-1100-36-ASM
hom G @ chr5:82869125

 

GS18502 - var-GS18502-1100-36-ASM
hom G @ chr5:82869125

 

GS18505 - var-GS18505-1100-36-ASM
het G @ chr5:82869125

 

GS18508 - var-GS18508-1100-36-ASM
hom G @ chr5:82869125

 

GS18526 - var-GS18526-1100-36-ASM
het G @ chr5:82869125

 

GS18537 - var-GS18537-1100-36-ASM
het G @ chr5:82869125

 

GS18558 - var-GS18558-1100-36-ASM
het G @ chr5:82869125

 

GS18940 - var-GS18940-1100-36-ASM
het G @ chr5:82869125

 

GS18942 - var-GS18942-1100-36-ASM
het G @ chr5:82869125

 

GS18947 - var-GS18947-1100-36-ASM
het G @ chr5:82869125

 

GS18956 - var-GS18956-1100-36-ASM
het G @ chr5:82869125

 

GS19017 - var-GS19017-1100-36-ASM
hom G @ chr5:82869125

 

GS19020 - var-GS19020-1100-36-ASM
het G @ chr5:82869125

 

GS19025 - var-GS19025-1100-36-ASM
hom G @ chr5:82869125

 

GS19026 - var-GS19026-1100-36-ASM
hom G @ chr5:82869125

 

GS19129 - var-GS19129-1100-36-ASM
hom G @ chr5:82869125

 

GS19238 - var-GS19238-1100-36-ASM
hom G @ chr5:82869125

 

GS19239 - var-GS19239-1100-36-ASM
het G @ chr5:82869125

 

GS19240 - var-GS19240-1100-36-ASM
hom G @ chr5:82869125

 

GS19648 - var-GS19648-1100-36-ASM
hom G @ chr5:82869125

 

GS19649 - var-GS19649-1100-36-ASM
het G @ chr5:82869125

 

GS19669 - var-GS19669-1100-36-ASM
het G @ chr5:82869125

 

GS19700 - var-GS19700-1100-36-ASM
het G @ chr5:82869125

 

GS19703 - var-GS19703-1100-36-ASM
het G @ chr5:82869125

 

GS19704 - var-GS19704-1100-36-ASM
het G @ chr5:82869125

 

GS19735 - var-GS19735-1100-36-ASM
het G @ chr5:82869125

 

GS19834 - var-GS19834-1100-36-ASM
het G @ chr5:82869125

 

GS20509 - var-GS20509-1100-36-ASM
het G @ chr5:82869125

 

GS21767 - var-GS21767-1100-36-ASM
hom G @ chr5:82869125

 

Other external references
 

    dbSNP
  • rs309559
    www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi
    PolyPhen-2
  • Score: 0 (benign)
    Web search results (1 hit -- see all)
  • Type III 95%
    ... 915) CK2 (0.834) RSK (0.919) PKA (0.915) GM1G1 10839995 VCAN P13611 K1516R 1521 VAR_021959 CK2 (0.671) PKC (0.641) Polymorphism (dbSNP:rs309559 ...
    nih.go.kr/phosphovariant/html/family_whole/TypeIII_95.txt

Other in silico analyses
 

  • NBLOSUM100 score = –3
  • GET-Evidence autoscore = 3

Edit history
 

Gene search

"GENE" or "GENE A123C":

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