FPR1 I11T - GET-Evidence

Note: This variant has not been sufficiently evaluated by a GET-Evidence editor.

To be considered sufficiently evaluated a variant must have both "variant evidence" and "clinical importance" scores filled in.

Please help improve GET-Evidence by evaluating evidence for this variant!

Curation:
Currentness:

(See the latest version)

FPR1 I11T

(FPR1 Ile11Thr)


You are viewing an old version of this page that was saved on November 29, 2012 at 4:24am by Genome Importing Robot.

Short summary

 

Variant evidence
Computational -
Functional -
Case/Control -
Familial -
 
Clinical importance
Severity -
Treatability -
Penetrance -
 

Impact

Insufficiently evaluated pharmacogenetic

(The "insufficiently evaluated" qualifier is assigned automatically based on the above evidence and importance scores.)

Inheritance pattern

unknown

Summary of published research, and additional commentary

 

Allele frequency

  • G @ chr19:52250216: 77.3% (8317/10758) in EVS
  • G @ chr19:56942027: 75.4% (95/126) in GET-Evidence
  • Frequency shown in summary reports: 77.3% (8317/10758)

Publications
 

Bhattacharya M, Wang J, Ribeiro FM, Dixon SJ, Feldman RD, Hegele RA, Ferguson SS. Analysis of a missense variant of the human N-formyl peptide receptor that is associated with agonist-independent beta-arrestin association and indices of inflammation. Pharmacogenomics J. 2007 Jun;7(3):190-9. Epub 2006 Sep 5. PubMed PMID: 16953235.

 

Benachour H, Zaiou M, Herbeth B, Lambert D, Lamont JV, Pfister M, Siest G, Tiret L, Blankenberg S, Fitzgerald PS, Visvikis-Siest S. Human formyl peptide receptor 1 (FPR1) c.32C>T SNP is associated with decreased soluble E-selectin levels. Pharmacogenomics. 2009 Jun;10(6):951-9. PubMed PMID: 19530962.

 

Genomes
 

hu034DB1 - CGI sample GS00253-DNA_A02_200_37
hom G @ chr19:52250216

 

hu04FD18 - CGI sample GS00253-DNA_F01_200_37
hom G @ chr19:52250216

 

hu0D879F - CGI sample GS00253-DNA_G01_200_37
het G @ chr19:52250216

 

hu0E64A1 - CGI sample GS01173-DNA_B02 from PGP sample 94378523
hom G @ chr19:52250216

 

 

hu2DBF2D - CGI sample GS01173-DNA_G02 from PGP sample 67180598
hom G @ chr19:52250216

 

 

Added in this revision:

hu342A08 - CGI sample GS01175-DNA_B05 from PGP sample 83494370
het G @ chr19:52250216

 

 

hu38168C - CGI sample GS01173-DNA_H06 from PGP sample 91708424
hom G @ chr19:52250216

 

 

hu43860C - CGI sample GS00253-DNA_A01_200_37
het G @ chr19:52250216

 

 

 

hu72A81D - CGI sample GS01173-DNA_C02 from PGP sample 10366372
het G @ chr19:52250216

 

hu9385BA - CGI sample GS00253-DNA_E01_200_37
het G @ chr19:52250216

 

huA0E089 - CGI sample GS01175-DNA_B04 from PGP sample 88590671
het G @ chr19:52250216

 

 

huAE6220 - CGI sample GS00253-DNA_H01_200_37
het G @ chr19:52250216

 

huB1FD55 - CGI sample GS01173-DNA_B07 from PGP sample 61499538
het G @ chr19:52250216

 

huBAAC98 - CGI sample GS01173-DNA_F02 from PGP sample 70008981
het G @ chr19:52250216

 

huBEDA0B - CGI sample GS00253-DNA_C01_200_37
het G @ chr19:52250216

 

huC30901 - CGI sample GS00253-DNA_B01_200_37
het G @ chr19:52250216

 

huCA017E - CGI sample GS01175-DNA_B01 from PGP sample 86206034
hom G @ chr19:52250216

 

huD37D14 - CGI sample GS01175-DNA_A04 from PGP sample 13272228
het G @ chr19:52250216

 

huD81F3D - CGI sample GS01173-DNA_D06 from PGP sample 69488604
hom G @ chr19:52250216

 

huE80E3D - CGI sample GS00253-DNA_D01_200_37
hom G @ chr19:52250216

 

GS06985 - var-GS06985-1100-36-ASM
hom G @ chr19:56942028

 

GS06994 - var-GS06994-1100-36-ASM
hom G @ chr19:56942028

 

GS07357 - var-GS07357-1100-36-ASM
het G @ chr19:56942028

 

GS10851 - var-GS10851-1100-36-ASM
hom G @ chr19:56942028

 

GS12004 - var-GS12004-1100-36-ASM
het G @ chr19:56942028

 

GS18501 - var-GS18501-1100-36-ASM
hom G @ chr19:56942028

 

GS18502 - var-GS18502-1100-36-ASM
hom G @ chr19:56942028

 

GS18504 - var-GS18504-1100-36-ASM
hom G @ chr19:56942028

 

GS18505 - var-GS18505-1100-36-ASM
hom G @ chr19:56942028

 

GS18508 - var-GS18508-1100-36-ASM
hom G @ chr19:56942028

 

GS18517 - var-GS18517-1100-36-ASM
het G @ chr19:56942028

 

GS18526 - var-GS18526-1100-36-ASM
hom G @ chr19:56942028

 

GS18537 - var-GS18537-1100-36-ASM
hom G @ chr19:56942028

 

GS18555 - var-GS18555-1100-36-ASM
hom G @ chr19:56942028

 

GS18558 - var-GS18558-1100-36-ASM
het G @ chr19:56942028

 

GS18940 - var-GS18940-1100-36-ASM
hom G @ chr19:56942028

 

GS18942 - var-GS18942-1100-36-ASM
het G @ chr19:56942028

 

GS18947 - var-GS18947-1100-36-ASM
hom G @ chr19:56942028

 

GS18956 - var-GS18956-1100-36-ASM
hom G @ chr19:56942028

 

GS19017 - var-GS19017-1100-36-ASM
hom G @ chr19:56942028

 

GS19020 - var-GS19020-1100-36-ASM
het G @ chr19:56942028

 

GS19025 - var-GS19025-1100-36-ASM
het G @ chr19:56942028

 

GS19026 - var-GS19026-1100-36-ASM
hom G @ chr19:56942028

 

GS19129 - var-GS19129-1100-36-ASM
hom G @ chr19:56942028

 

GS19239 - var-GS19239-1100-36-ASM
hom G @ chr19:56942028

 

GS19240 - var-GS19240-1100-36-ASM
het G @ chr19:56942028

 

GS19648 - var-GS19648-1100-36-ASM
hom G @ chr19:56942028

 

GS19649 - var-GS19649-1100-36-ASM
het G @ chr19:56942028

 

GS19669 - var-GS19669-1100-36-ASM
hom G @ chr19:56942028

 

GS19670 - var-GS19670-1100-36-ASM
hom G @ chr19:56942028

 

GS19700 - var-GS19700-1100-36-ASM
hom G @ chr19:56942028

 

GS19701 - var-GS19701-1100-36-ASM
het G @ chr19:56942028

 

GS19704 - var-GS19704-1100-36-ASM
hom G @ chr19:56942028

 

GS19735 - var-GS19735-1100-36-ASM
het G @ chr19:56942028

 

GS19834 - var-GS19834-1100-36-ASM
hom G @ chr19:56942028

 

GS20502 - var-GS20502-1100-36-ASM
hom G @ chr19:56942028

 

GS20509 - var-GS20509-1100-36-ASM
het G @ chr19:56942028

 

Other external references
 

    dbSNP
  • rs5030878
    www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi

Other in silico analyses
 

  • NBLOSUM100 score = 3
  • GET-Evidence autoscore = 1

Edit history
 

Gene search

"GENE" or "GENE A123C":

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