ALMS1 R4029K - GET-Evidence

Note: This variant has not been sufficiently evaluated by a GET-Evidence editor.

To be considered sufficiently evaluated a variant must have both "variant evidence" and "clinical importance" scores filled in.

Please help improve GET-Evidence by evaluating evidence for this variant!

Curation:
Currentness:

(See the latest version)

ALMS1 R4029K

(ALMS1 Arg4029Lys)


You are viewing an old version of this page that was saved on December 27, 2009 at 4:09pm by Genome Importing Robot.

Short summary

 

Variant evidence
Computational -
Functional -
Case/Control -
Familial -
 
Clinical importance
Severity -
Treatability -
Penetrance -
 

Impact

Insufficiently evaluated not reviewed

(The "insufficiently evaluated" qualifier is assigned automatically based on the above evidence and importance scores.)

Inheritance pattern

unknown

Summary of published research, and additional commentary

 

Allele frequency

  • A @ chr2:73828538: 54.0% (5811/10754) in EVS
  • A @ chr2:73682045: 54.7% (70/128) in GET-Evidence
  • Frequency shown in summary reports: 54.0% (5811/10754)

Publications
 

Genomes
 

NA12878

 

NA18517

 

NA18555

 

Added in this revision:

NA18956

 

snp-1

 

snp-2

 

Other external references
 

    Web search results (6 hits -- see all)
  • SNPs Identified in ALMS1
    R4029K. G/A. WIPGA_03_535. chr2:73803133. Intronic. view. C/T. WIPGA_03_536 ... and Genotyping > Candidate Gene List > ALMS1 Main Page > SNPs Identified in ALMS1 ...
    cardiogenomics.med.harvard.edu/.../ALMS1_validated_SNPs.html

Other in silico analyses
 

  • NBLOSUM100 score = –3
  • GET-Evidence autoscore = 3

Edit history
 

Gene search

"GENE" or "GENE A123C":

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